HL_6C4I_114

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CAGCC(G7M)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C4I_114 not in the Motif Atlas

Homologous match to HL_5J7L_205

Geometric discrepancy: 0.1226

The information below is about HL_5J7L_205

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6C4I|1|a|C|522
6C4I|1|a|A|523
6C4I|1|a|G|524
6C4I|1|a|C|525
6C4I|1|a|C|526
6C4I|1|a|G7M|527

Current chains

Chain a

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain w

Alternative ribosome-rescue factor A