HL_6C5L_027

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_027 not in the Motif Atlas

Homologous match to HL_5J7L_027

Geometric discrepancy: 0.2515

The information below is about HL_5J7L_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6C5L|1|AA|G|1265
6C5L|1|AA|G|1266
6C5L|1|AA|C|1267
6C5L|1|AA|A|1268
6C5L|1|AA|A|1269
6C5L|1|AA|C|1270

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AM

30S ribosomal protein S13

Chain AS

30S ribosomal protein S19

Chain AU

30S ribosomal protein Thx