HL_6C5L_035

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

6C5L|1|AW|C|17

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_035 not in the Motif Atlas

Homologous match to HL_4WT8_135

Geometric discrepancy: 0.5217

The information below is about HL_4WT8_135

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.3

Basepair signature

cWW-cWS-F

Number of instances in this motif group

16

Unit IDs

6C5L|1|AW|C|13
6C5L|1|AW|A|14
6C5L|1|AW|G|15
6C5L|1|AW|U|16
6C5L|1|AW|C|17
6C5L|1|AW|G|18
6C5L|1|AW|G|19
6C5L|1|AW|U|20
6C5L|1|AW|A|21
6C5L|1|AW|G|22

Current chains

Chain AW

E-site tRNA PHE OR P-site tRNA PHE (unmodified bases)

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BC

50S ribosomal protein L1