HL_6C5L_047

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

6C5L|1|BA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_047 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1251

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

6C5L|1|BA|U|305
6C5L|1|BA|U|306
6C5L|1|BA|G|307
6C5L|1|BA|G|308
6C5L|1|BA|G|309
6C5L|1|BA|A|310
6C5L|1|BA|A|311
6C5L|1|BA|G|312

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BY

50S ribosomal protein L24