3D structure

PDB id
6C5L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GUGAAAGCC
Length
9 nucleotides
Bulged bases
6C5L|1|BA|G|329, 6C5L|1|BA|A|330, 6C5L|1|BA|A|331
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6C5L_049 not in the Motif Atlas
Homologous match to HL_5J7L_144
Geometric discrepancy: 0.1083
The information below is about HL_5J7L_144
Detailed Annotation
T-loop with unstacked turn
Broad Annotation
T-loop
Motif group
HL_27670.2
Basepair signature
cWW-tWH-F-F
Number of instances in this motif group
13

Unit IDs

6C5L|1|BA|G|327
6C5L|1|BA|U|328
6C5L|1|BA|G|329
6C5L|1|BA|A|330
6C5L|1|BA|A|331
6C5L|1|BA|A|332
6C5L|1|BA|G|333
6C5L|1|BA|C|334
6C5L|1|BA|C|335

Current chains

Chain BA
23S rRNA

Nearby chains

Chain BF
50S ribosomal protein L4
Chain BY
50S ribosomal protein L24

Coloring options:


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