HL_6C5L_062

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

6C5L|1|BA|U|827, 6C5L|1|BA|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_062 not in the Motif Atlas

Homologous match to HL_7RQB_025

Geometric discrepancy: 0.0949

The information below is about HL_7RQB_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

6C5L|1|BA|U|826
6C5L|1|BA|U|827
6C5L|1|BA|U|828
6C5L|1|BA|A|829
6C5L|1|BA|G|830
6C5L|1|BA|G|831

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BP

50S ribosomal protein L15