HL_6C5L_067

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_067 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.1563

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6C5L|1|BA|C|1092
6C5L|1|BA|G|1093
6C5L|1|BA|U|1094
6C5L|1|BA|A|1095
6C5L|1|BA|A|1096
6C5L|1|BA|U|1097
6C5L|1|BA|A|1098
6C5L|1|BA|G|1099

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AY

Peptide chain release factor 2

Chain B9

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6

Chain BK

50S ribosomal protein L11