HL_6C5L_094

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCUGCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_094 not in the Motif Atlas

Homologous match to HL_7RQB_057

Geometric discrepancy: 0.115

The information below is about HL_7RQB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

6C5L|1|BA|C|2355
6C5L|1|BA|C|2356
6C5L|1|BA|U|2357
6C5L|1|BA|G|2358
6C5L|1|BA|C|2359
6C5L|1|BA|A|2360
6C5L|1|BA|A|2361
6C5L|1|BA|G|2362

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B0

50S ribosomal protein L27

Chain B8

50S ribosomal protein L35

Chain BP

50S ribosomal protein L15