HL_6C5L_095

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_095 not in the Motif Atlas

Homologous match to HL_5J7L_191

Geometric discrepancy: 0.1113

The information below is about HL_5J7L_191

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6C5L|1|BA|C|2374
6C5L|1|BA|G|2375
6C5L|1|BA|A|2376
6C5L|1|BA|A|2377
6C5L|1|BA|A|2378
6C5L|1|BA|G|2379

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B6

50S ribosomal protein L33

Chain BS

50S ribosomal protein L18