HL_6C5L_123
3D structure
- PDB id
- 6C5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6C5L_123 not in the Motif Atlas
- Homologous match to HL_6CZR_086
- Geometric discrepancy: 0.1218
- The information below is about HL_6CZR_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
6C5L|1|CA|C|689
6C5L|1|CA|G|690
6C5L|1|CA|G|691
6C5L|1|CA|U|692
6C5L|1|CA|G|693
6C5L|1|CA|A|694
6C5L|1|CA|A|695
6C5L|1|CA|A|696
6C5L|1|CA|U|697
6C5L|1|CA|G|698
Current chains
- Chain CA
- 16S rRNA
Nearby chains
- Chain CG
- 30S ribosomal protein S7
- Chain CK
- 30S ribosomal protein S11
- Chain CW
- Transfer RNA; tRNA
- Chain CX
- mRNA
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
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