HL_6C5L_129
3D structure
- PDB id
- 6C5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GAAGCAACGC
- Length
- 10 nucleotides
- Bulged bases
- 6C5L|1|CA|G|971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6C5L_129 not in the Motif Atlas
- Homologous match to HL_4LFB_021
- Geometric discrepancy: 0.151
- The information below is about HL_4LFB_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6C5L|1|CA|G|963
6C5L|1|CA|A|964
6C5L|1|CA|A|965
6C5L|1|CA|G|966
6C5L|1|CA|C|967
6C5L|1|CA|A|968
6C5L|1|CA|A|969
6C5L|1|CA|C|970
6C5L|1|CA|G|971
6C5L|1|CA|C|972
Current chains
- Chain CA
- 16S rRNA
Nearby chains
- Chain CI
- 30S ribosomal protein S9
- Chain CJ
- 30S ribosomal protein S10
- Chain CM
- 30S ribosomal protein S13
- Chain CV
- Transfer RNA; tRNA
- Chain CY
- Peptide chain release factor 2
Coloring options: