HL_6C5L_146
3D structure
- PDB id
- 6C5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UGGCUACCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6C5L_146 not in the Motif Atlas
- Homologous match to HL_7RQB_001
- Geometric discrepancy: 0.1201
- The information below is about HL_7RQB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99167.2
- Basepair signature
- cWW-F-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
6C5L|1|DA|U|59
6C5L|1|DA|G|60
6C5L|1|DA|G|61
6C5L|1|DA|C|62
6C5L|1|DA|U|63
6C5L|1|DA|A|64
6C5L|1|DA|C|65
6C5L|1|DA|C|66
6C5L|1|DA|U|67
6C5L|1|DA|G|68
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D2
- 50S ribosomal protein L29
- Chain D7
- 50S ribosomal protein L34
- Chain DX
- 50S ribosomal protein L23
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