HL_6C5L_149

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_149 not in the Motif Atlas

Homologous match to HL_7RQB_004

Geometric discrepancy: 0.2957

The information below is about HL_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79921.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

15

Unit IDs

6C5L|1|DA|G|139
6C5L|1|DA|G|139|||A
6C5L|1|DA|G|140
6C5L|1|DA|A|141
6C5L|1|DA|A|142
6C5L|1|DA|C|142|||A

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L29

Chain DX

50S ribosomal protein L23