HL_6C5L_166

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

6C5L|1|DA|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_166 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.3748

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6C5L|1|DA|C|641
6C5L|1|DA|G|642
6C5L|1|DA|A|643
6C5L|1|DA|A|644
6C5L|1|DA|C|645
6C5L|1|DA|A|646
6C5L|1|DA|G|647

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D6

50S ribosomal protein L33

Chain D8

50S ribosomal protein L35

Chain DP

50S ribosomal protein L15