HL_6C5L_167

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUGAGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_167 not in the Motif Atlas

Homologous match to HL_7RQB_022

Geometric discrepancy: 0.1087

The information below is about HL_7RQB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84085.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6C5L|1|DA|G|712
6C5L|1|DA|G|713
6C5L|1|DA|U|714
6C5L|1|DA|G|715
6C5L|1|DA|A|716
6C5L|1|DA|G|717
6C5L|1|DA|A|718
6C5L|1|DA|C|719

Current chains

Chain DA

23S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CO

30S ribosomal protein S15

Chain CQ

30S ribosomal protein S17

Chain DD

50S ribosomal protein L2