HL_6C5L_196

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6C5L|1|DA|A|2030, 6C5L|1|DA|A|2031, 6C5L|1|DA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_196 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0998

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

6C5L|1|DA|G|2027
6C5L|1|DA|U|2028
6C5L|1|DA|G|2029
6C5L|1|DA|A|2030
6C5L|1|DA|A|2031
6C5L|1|DA|G|2032
6C5L|1|DA|A|2033
6C5L|1|DA|U|2034
6C5L|1|DA|G|2035
6C5L|1|DA|C|2036

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D5

50S ribosomal protein L32

Chain DE

50S ribosomal protein L3