HL_6C5L_200

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

6C5L|1|DA|A|2268, 6C5L|1|DA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_200 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0802

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6C5L|1|DA|C|2264
6C5L|1|DA|U|2265
6C5L|1|DA|A|2266
6C5L|1|DA|A|2267
6C5L|1|DA|A|2268
6C5L|1|DA|A|2269
6C5L|1|DA|G|2270
6C5L|1|DA|G|2271
6C5L|1|DA|U|2272
6C5L|1|DA|A|2273
6C5L|1|DA|A|2274
6C5L|1|DA|C|2275
6C5L|1|DA|G|2276

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L27

Chain DQ

50S ribosomal protein L16