HL_6C5L_219

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCUUUGC

Length

7 nucleotides

Bulged bases

6C5L|1|AA|U|202, 6C5L|1|AA|U|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_219 not in the Motif Atlas

Homologous match to HL_6CZR_076

Geometric discrepancy: 0.3907

The information below is about HL_6CZR_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34168.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

11

Unit IDs

6C5L|1|AA|G|200
6C5L|1|AA|C|201
6C5L|1|AA|U|202
6C5L|1|AA|U|203
6C5L|1|AA|U|204
6C5L|1|AA|G|216
6C5L|1|AA|C|217

Current chains

Chain AA

16S rRNA

Nearby chains