HL_6C5L_227

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAGAAAUC

Length

8 nucleotides

Bulged bases

6C5L|1|DA|A|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_227 not in the Motif Atlas

Geometric match to HL_9H3G_038

Geometric discrepancy: 0.3045

The information below is about HL_9H3G_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46211.1

Basepair signature

cWW-cWW-tSW-F

Number of instances in this motif group

10

Unit IDs

6C5L|1|DA|G|224
6C5L|1|DA|A|225
6C5L|1|DA|G|226
6C5L|1|DA|A|227
6C5L|1|DA|A|228
6C5L|1|DA|A|229
6C5L|1|DA|U|230
6C5L|1|DA|C|231

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DP

50S ribosomal protein L15