HL_6C5L_231

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAUGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_231 not in the Motif Atlas

Homologous match to HL_9DFE_041

Geometric discrepancy: 0.5527

The information below is about HL_9DFE_041

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6C5L|1|DA|U|1720
6C5L|1|DA|G|1721
6C5L|1|DA|A|1722
6C5L|1|DA|U|1739
6C5L|1|DA|G|1740
6C5L|1|DA|A|1741
6C5L|1|DA|G|1742

Current chains

Chain DA

23S rRNA

Nearby chains