HL_6C64_001

3D structure

PDB id

6C64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Mango-II Fluorescent Aptamer Bound to TO3-Biotin

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAGGAGAGGAGAGGAAGAGGAGAG

Length

26 nucleotides

Bulged bases

6C64|1|A|A|12, 6C64|1|A|A|17, 6C64|1|A|A|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C64_001 not in the Motif Atlas

Geometric match to HL_6C63_001

Geometric discrepancy: 0.0434

The information below is about HL_6C63_001

Detailed Annotation

G-quadruplex

Broad Annotation

No text annotation

Motif group

HL_12758.2

Basepair signature

cWW-tSH-F-cHW-cWH-F-F-tSH-cWH-cHW-cWH-cHW-cWH-cWH-cHW-tSH-cHW-cWH-F-cWH

Number of instances in this motif group

3

Unit IDs

6C64|1|A|C|6
6C64|1|A|G|7
6C64|1|A|A|8
6C64|1|A|A|9
6C64|1|A|G|10
6C64|1|A|G|11
6C64|1|A|A|12
6C64|1|A|G|13
6C64|1|A|A|14
6C64|1|A|G|15
6C64|1|A|G|16
6C64|1|A|A|17
6C64|1|A|G|18
6C64|1|A|A|19
6C64|1|A|G|20
6C64|1|A|G|21
6C64|1|A|A|22
6C64|1|A|A|23
6C64|1|A|G|24
6C64|1|A|A|25
6C64|1|A|G|26
6C64|1|A|G|27
6C64|1|A|A|28
6C64|1|A|G|29
6C64|1|A|A|30
6C64|1|A|G|31

Current chains

Chain A

RNA (36-MER)

Nearby chains

Chain B

RNA (36-MER)

Chain D

RNA (32-MER)