Motif HL_12758.2 Version HL_12758.2 of this group appears in releases 3.82 to 3.87
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 1-22 | 2-21 | 5-8 | 5-9 | 5-12 | 5-17 | 6-10 | 6-13 | 6-18 | 7-11 | 7-15 | 7-20 | 9-12 | 9-17 | 10-13 | 10-18 | 11-15 | 11-20 | 12-16 | 12-17 | 13-18 | 15-20 | ||||||||||||||||||||||
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1 | HL_5V3F_001 | 5V3F | 0.8353 | 3 | A | RNA (31-MER) | C | 4 | G | 5 | A | 6 | A | 7 | G | 8 | G | 9 | G | 10 | C | 12 | G | 13 | G | 14 | G | 16 | G | 18 | G | 19 | A | 20 | G | 21 | A | 22 | G | 23 | G | 24 | A | 25 | G | 26 | A | 27 | G | 28 | cWW | tSH | cWH | cHW | cWH | cHW | cHW | cWH | cWH | cWH | cHW | tSH | cWH | cWH | cHW | ||||||||
2 | HL_6C63_001 | 6C63 | 0.3822 | 4 | A | RNA (36-MER) | C | 6 | G | 7 | A | 8 | A | 9 | G | 10 | G | 11 | G | 13 | A | 14 | G | 15 | G | 16 | G | 18 | G | 20 | G | 21 | A | 23 | G | 24 | A | 25 | G | 26 | G | 27 | A | 28 | G | 29 | A | 30 | G | 31 | cWW | tSH | tSH | cWH | cHW | cWH | cHW | cHW | cWH | cWH | cWH | cHW | tSH | cWH | cWH | cHW | |||||||
3 | HL_8U5Z_001 | 8U5Z | 0.0000 | 4 | A | Mango II variant | C | 6 | G | 7 | A | 8 | A | 9 | G | 10 | G | 11 | G | 13 | A | 14 | G | 15 | G | 16 | G | 18 | G | 20 | G | 21 | C | 22 | G | 23 | A | 24 | G | 25 | G | 26 | A | 27 | G | 29 | A | 30 | G | 31 | cWW | tSH | ntSH | cWH | ntWW | cHW | cWH | ntWW | cHW | cHW | ntWW | cWH | cWH | ntWW | cWH | ntWW | cHW | ntWW | ntSH | cWH | cWH | cHW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGAAGGGACGGUGCGGAGAGGAGAG | 1 |
CGAAGGAGAGGAGAGGAAGAGGAGAG | 1 |
CGAAGGUGAGGAGAGGCGAGGAAGAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAAGGGACGGUGCGGAGAGGAGA | 1 |
GAAGGAGAGGAGAGGAAGAGGAGA | 1 |
GAAGGUGAGGAGAGGCGAGGAAGA | 1 |
- Annotations
- Basepair signature
- cWW-tSH-F-cHW-cWH-F-F-tSH-cWH-cHW-cWH-cHW-cWH-cWH-cHW-tSH-cHW-cWH-F-cWH
- Heat map statistics
- Min 0.38 | Avg 0.41 | Max 0.84
Coloring options: