Motif HL_12758.2 Version HL_12758.2 of this group appears in releases 3.82 to 3.93
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 1-22 | 2-21 | 5-8 | 5-9 | 5-17 | 6-10 | 6-18 | 7-11 | 7-20 | 9-12 | 10-13 | 11-15 | 12-16 | 12-17 | 13-18 | 15-20 | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5V3F_001 | 5V3F | 0.6382 | 3 | G-quadruplex | A | RNA (31-MER) | C | 4 | G | 5 | A | 6 | A | 7 | G | 8 | G | 9 | G | 10 | C | 12 | G | 13 | G | 14 | G | 16 | G | 18 | G | 19 | A | 20 | G | 21 | A | 22 | G | 23 | G | 24 | A | 25 | G | 26 | A | 27 | G | 28 | cWW | tSH | cWH | cHW | cWH | cHW | cHW | cWH | cWH | cWH | cHW | tSH | cWH | cWH | cHW | |
| 2 | HL_6C63_001 | 6C63 | 0.0000 | 4 | G-quadruplex | A | RNA (36-MER) | C | 6 | G | 7 | A | 8 | A | 9 | G | 10 | G | 11 | G | 13 | A | 14 | G | 15 | G | 16 | G | 18 | G | 20 | G | 21 | A | 23 | G | 24 | A | 25 | G | 26 | G | 27 | A | 28 | G | 29 | A | 30 | G | 31 | cWW | tSH | tSH | cWH | cHW | cWH | cHW | cHW | cWH | cWH | cWH | cHW | tSH | cWH | cWH | cHW |
| 3 | HL_8U5Z_001 | 8U5Z | 0.3822 | 4 | G-quadruplex | A | Mango II variant | C | 6 | G | 7 | A | 8 | A | 9 | G | 10 | G | 11 | G | 13 | A | 14 | G | 15 | G | 16 | G | 18 | G | 20 | G | 21 | C | 22 | G | 23 | A | 24 | G | 25 | G | 26 | A | 27 | G | 29 | A | 30 | G | 31 | cWW | tSH | tSH | cWH | cHW | cWH | cHW | cHW | cWH | cWH | cWH | cHW | tSH | cWH | cWH | cHW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAGGGACGGUGCGGAGAGGAGAG | 1 |
| CGAAGGAGAGGAGAGGAAGAGGAGAG | 1 |
| CGAAGGUGAGGAGAGGCGAGGAAGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAGGGACGGUGCGGAGAGGAGA | 1 |
| GAAGGAGAGGAGAGGAAGAGGAGA | 1 |
| GAAGGUGAGGAGAGGCGAGGAAGA | 1 |
Release history
| Release | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- G-quadruplex (3)
- Basepair signature
- cWW-tSH-F-cHW-cWH-F-F-tSH-cWH-cHW-cWH-cHW-cWH-cWH-cHW-tSH-cHW-cWH-F-cWH
- Heat map statistics
- Min 0.38 | Avg 0.41 | Max 0.84
Coloring options: