HL_6C64_002
3D structure
- PDB id
- 6C64 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of the Mango-II Fluorescent Aptamer Bound to TO3-Biotin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGAAGGAGAGGAGAGGAAGAGGAGAG
- Length
- 26 nucleotides
- Bulged bases
- 6C64|1|B|A|12, 6C64|1|B|A|17, 6C64|1|B|A|19
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6C64_002 not in the Motif Atlas
- Geometric match to HL_6C63_001
- Geometric discrepancy: 0.37
- The information below is about HL_6C63_001
- Detailed Annotation
- G-quadruplex
- Broad Annotation
- No text annotation
- Motif group
- HL_12758.2
- Basepair signature
- cWW-tSH-F-cHW-cWH-F-F-tSH-cWH-cHW-cWH-cHW-cWH-cWH-cHW-tSH-cHW-cWH-F-cWH
- Number of instances in this motif group
- 3
Unit IDs
6C64|1|B|C|6
6C64|1|B|G|7
6C64|1|B|A|8
6C64|1|B|A|9
6C64|1|B|G|10
6C64|1|B|G|11
6C64|1|B|A|12
6C64|1|B|G|13
6C64|1|B|A|14
6C64|1|B|G|15
6C64|1|B|G|16
6C64|1|B|A|17
6C64|1|B|G|18
6C64|1|B|A|19
6C64|1|B|G|20
6C64|1|B|G|21
6C64|1|B|A|22
6C64|1|B|A|23
6C64|1|B|G|24
6C64|1|B|A|25
6C64|1|B|G|26
6C64|1|B|G|27
6C64|1|B|A|28
6C64|1|B|G|29
6C64|1|B|A|30
6C64|1|B|G|31
Current chains
- Chain B
- RNA (36-MER)
Nearby chains
- Chain A
- RNA (36-MER)
- Chain D
- RNA (32-MER)
Coloring options: