HL_6CAE_215
3D structure
- PDB id
- 6CAE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CCU(CM0)AC(6MZ)AG
- Length
- 9 nucleotides
- Bulged bases
- 6CAE|1|2w|U|33
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6CAE_215 not in the Motif Atlas
- Homologous match to HL_3TUP_002
- Geometric discrepancy: 0.1658
- The information below is about HL_3TUP_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6CAE|1|2w|C|31
6CAE|1|2w|C|32
6CAE|1|2w|U|33
6CAE|1|2w|CM0|34
6CAE|1|2w|A|35
6CAE|1|2w|C|36
6CAE|1|2w|6MZ|37
6CAE|1|2w|A|38
6CAE|1|2w|G|39
Current chains
- Chain 2w
- A-site and E-site tRNAs
Nearby chains
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2l
- 30S ribosomal protein S12
- Chain 2m
- 30S ribosomal protein S13
- Chain 2v
- mRNA
- Chain C
- NOSO-95179 antibiotic
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