HL_6CAP_005

3D structure

PDB id

6CAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCUUUGC

Length

7 nucleotides

Bulged bases

6CAP|1|A|U|202

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CAP_005 not in the Motif Atlas

Homologous match to HL_6CZR_076

Geometric discrepancy: 0.376

The information below is about HL_6CZR_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34168.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

11

Unit IDs

6CAP|1|A|G|200
6CAP|1|A|C|201
6CAP|1|A|U|202
6CAP|1|A|U|203
6CAP|1|A|U|204
6CAP|1|A|G|216
6CAP|1|A|C|217

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains