HL_6CAP_006

3D structure

PDB id

6CAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

6CAP|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CAP_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0813

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6CAP|1|A|G|259
6CAP|1|A|G|260
6CAP|1|A|U|261
6CAP|1|A|A|262
6CAP|1|A|A|263
6CAP|1|A|U|264
6CAP|1|A|G|265
6CAP|1|A|G|266
6CAP|1|A|C|267

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20