HL_6CAR_014

3D structure

PDB id

6CAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CAR_014 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.085

The information below is about HL_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6CAR|1|A|G|617
6CAR|1|A|C|618
6CAR|1|A|U|619
6CAR|1|A|C|620
6CAR|1|A|A|621
6CAR|1|A|A|622
6CAR|1|A|C|623

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain P

30S ribosomal protein S16