HL_6CAR_034

3D structure

PDB id

6CAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAGCC(G7M)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CAR_034 not in the Motif Atlas

Homologous match to HL_5J7L_205

Geometric discrepancy: 0.0747

The information below is about HL_5J7L_205

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6CAR|1|A|C|522
6CAR|1|A|A|523
6CAR|1|A|G|524
6CAR|1|A|C|525
6CAR|1|A|C|526
6CAR|1|A|G7M|527

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain Y

RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')