HL_6CAS_006

3D structure

PDB id

6CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with N1MS

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

6CAS|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CAS_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0752

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_36455.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6CAS|1|A|G|259
6CAS|1|A|G|260
6CAS|1|A|U|261
6CAS|1|A|A|262
6CAS|1|A|A|263
6CAS|1|A|U|264
6CAS|1|A|G|265
6CAS|1|A|G|266
6CAS|1|A|C|267

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20