HL_6CB1_024

3D structure

PDB id

6CB1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

6CB1|1|1|U|1606, 6CB1|1|1|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CB1_024 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.1005

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6CB1|1|1|G|1599
6CB1|1|1|U|1600
6CB1|1|1|U|1601
6CB1|1|1|A|1602
6CB1|1|1|A|1603
6CB1|1|1|G|1604
6CB1|1|1|A|1605
6CB1|1|1|U|1606
6CB1|1|1|U|1607
6CB1|1|1|C|1608

Current chains

Chain 1

35S pre-ribosomal RNA miscRNA

Nearby chains

Chain X

60S ribosomal protein L25

Chain g

60S ribosomal protein L34-A