6CB1 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6CB1_012 | 1/1/462:468 | UNCG variation | geometric HL_6VMY_004 HL_51020.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6CB1_001 | No text annotation | ||
| HL_6CB1_002 | No text annotation | ||
| HL_6CB1_003 | No text annotation | ||
| HL_6CB1_004 | No text annotation | ||
| HL_6CB1_005 | T-loop with 2 stacked bulged bases | ||
| HL_6CB1_006 | No text annotation | ||
| HL_6CB1_007 | T-loop with unstacked turn | ||
| HL_6CB1_008 | No text annotation | ||
| HL_6CB1_009 | No text annotation | ||
| HL_6CB1_010 | GNRA | ||
| HL_6CB1_011 | GNRA | ||
| HL_6CB1_013 | No text annotation | ||
| HL_6CB1_014 | GNRA | ||
| HL_6CB1_015 | No text annotation | ||
| HL_6CB1_038 | No text annotation | ||
| HL_6CB1_016 | GNRA | ||
| HL_6CB1_017 | No text annotation | ||
| HL_6CB1_018 | No text annotation | ||
| HL_6CB1_019 | No text annotation | ||
| HL_6CB1_020 | No text annotation | ||
| HL_6CB1_021 | GNRA | ||
| HL_6CB1_022 | GNRA variation | ||
| HL_6CB1_023 | No text annotation | ||
| HL_6CB1_024 | No text annotation | ||
| HL_6CB1_025 | GNRA | ||
| HL_6CB1_039 | No text annotation | ||
| HL_6CB1_026 | No text annotation | ||
| HL_6CB1_027 | No text annotation | ||
| HL_6CB1_028 | No text annotation | ||
| HL_6CB1_029 | Mini UNCG | ||
| HL_6CB1_030 | No text annotation | ||
| HL_6CB1_031 | No text annotation | ||
| HL_6CB1_040 | No text annotation | ||
| HL_6CB1_032 | No text annotation | ||
| HL_6CB1_033 | No text annotation | ||
| HL_6CB1_034 | No text annotation | ||
| HL_6CB1_035 | No text annotation | ||
| HL_6CB1_036 | No text annotation | ||
| HL_6CB1_041 | No text annotation | ||
| HL_6CB1_037 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6CB1_011 | 1/1/337:339, 1/2/25:26 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_6CB1_030 | 1/1/1376:1378, 1/1/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_6CB1_031 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A | homologous IL_8C3A_062 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6CB1_001 | Single bulged C | ||
| IL_6CB1_002 | Single bulged U | ||
| IL_6CB1_003 | No text annotation | ||
| IL_6CB1_004 | No text annotation | ||
| IL_6CB1_005 | No text annotation | ||
| IL_6CB1_006 | Isolated non-canonical cWW pair | ||
| IL_6CB1_007 | Single stack bend | ||
| IL_6CB1_008 | No text annotation | ||
| IL_6CB1_055 | No text annotation | ||
| IL_6CB1_009 | No text annotation | ||
| IL_6CB1_010 | Single bulged U | ||
| IL_6CB1_012 | No text annotation | ||
| IL_6CB1_013 | Triple sheared with non-canonical cWW | ||
| IL_6CB1_014 | Isolated non-canonical cWW pair | ||
| IL_6CB1_015 | Triple non-canonical cWW pairs | ||
| IL_6CB1_016 | Major groove minor groove platform with tHH | ||
| IL_6CB1_017 | Single bulged A | ||
| IL_6CB1_018 | No text annotation | ||
| IL_6CB1_019 | No text annotation | ||
| IL_6CB1_020 | Isolated non-canonical cWW pair | ||
| IL_6CB1_021 | No text annotation | ||
| IL_6CB1_022 | No text annotation | ||
| IL_6CB1_023 | Single bulged A | ||
| IL_6CB1_024 | No text annotation | ||
| IL_6CB1_025 | No text annotation | ||
| IL_6CB1_026 | UAA/GAN | ||
| IL_6CB1_027 | SSU/LSU pseudoknot | ||
| IL_6CB1_028 | Single bulged U | ||
| IL_6CB1_029 | No text annotation | ||
| IL_6CB1_032 | Kink-turn | ||
| IL_6CB1_033 | Single bulged A | ||
| IL_6CB1_034 | No text annotation | ||
| IL_6CB1_035 | UAA/GAN | ||
| IL_6CB1_054 | Single stack bend | ||
| IL_6CB1_036 | No text annotation | ||
| IL_6CB1_056 | No text annotation | ||
| IL_6CB1_037 | Multiple bulged bases with near cWW | ||
| IL_6CB1_038 | No text annotation | ||
| IL_6CB1_039 | Triple sheared | ||
| IL_6CB1_040 | Isolated non-canonical cWW pair | ||
| IL_6CB1_041 | Single bulged C | ||
| IL_6CB1_042 | Single stack bend | ||
| IL_6CB1_043 | No text annotation | ||
| IL_6CB1_044 | No text annotation | ||
| IL_6CB1_045 | Kink-turn | ||
| IL_6CB1_046 | Single bulged A | ||
| IL_6CB1_047 | No text annotation | ||
| IL_6CB1_048 | Single bulged U | ||
| IL_6CB1_049 | No text annotation | ||
| IL_6CB1_050 | Isolated non-canonical cWW pair | ||
| IL_6CB1_051 | Single bulged U | ||
| IL_6CB1_052 | Multiple bulged bases | ||
| IL_6CB1_053 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6CB1_011 | 1/1/436:442, 1/1/492:495, 1/1/618:623 | No text annotation | ||
| J3_6CB1_003 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation | homologous J3_5TBW_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6CB1_001 | No text annotation | ||
| J3_6CB1_007 | No text annotation | ||
| J3_6CB1_008 | No text annotation | ||
| J3_6CB1_009 | No text annotation | ||
| J3_6CB1_002 | No text annotation | ||
| J3_6CB1_010 | No text annotation | ||
| J3_6CB1_004 | No text annotation | ||
| J3_6CB1_005 | No text annotation | ||
| J3_6CB1_012 | No text annotation | ||
| J3_6CB1_006 | No text annotation | ||
| J3_6CB1_013 | No text annotation | ||
| J3_6CB1_014 | No text annotation | ||
| J4_6CB1_001 | No text annotation | ||
| J4_6CB1_002 | No text annotation | ||
| J4_6CB1_003 | No text annotation | ||
| J5_6CB1_001 | No text annotation | ||
| J5_6CB1_002 | No text annotation | ||
| J6_6CB1_001 | No text annotation |
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