HL_6CB1_026

3D structure

PDB id

6CB1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

6CB1|1|1|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CB1_026 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1789

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6CB1|1|1|G|1680
6CB1|1|1|U|1681
6CB1|1|1|U|1682
6CB1|1|1|A|1683
6CB1|1|1|U|1684
6CB1|1|1|C|1685
6CB1|1|1|U|1686
6CB1|1|1|U|1687
6CB1|1|1|U|1688

Current chains

Chain 1

35S pre-ribosomal RNA miscRNA

Nearby chains