HL_6CB1_028

3D structure

PDB id

6CB1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

6CB1|1|1|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CB1_028 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2149

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6CB1|1|1|C|1759
6CB1|1|1|A|1760
6CB1|1|1|C|1761
6CB1|1|1|C|1762
6CB1|1|1|U|1763
6CB1|1|1|U|1764
6CB1|1|1|U|1765
6CB1|1|1|G|1766

Current chains

Chain 1

35S pre-ribosomal RNA miscRNA

Nearby chains