HL_6CB1_038
3D structure
- PDB id
- 6CB1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast nucleolar pre-60S ribosomal subunit (state 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- UGUAAAA
- Length
- 7 nucleotides
- Bulged bases
- 6CB1|1|1|U|689, 6CB1|1|1|A|691
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6CB1_038 not in the Motif Atlas
- Geometric match to HL_5J7L_151
- Geometric discrepancy: 0.2509
- The information below is about HL_5J7L_151
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_80922.2
- Basepair signature
- cWW-tSH-F
- Number of instances in this motif group
- 3
Unit IDs
6CB1|1|1|U|687
6CB1|1|1|G|688
6CB1|1|1|U|689
6CB1|1|1|A|690
6CB1|1|1|A|691
6CB1|1|1|A|692
6CB1|1|1|A|693
Current chains
- Chain 1
- 35S pre-ribosomal RNA miscRNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 7
- Nucleolar protein 16
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain Y
- 60S ribosomal protein L26-A
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