HL_6CFJ_106

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

6CFJ|1|1x|G|18, 6CFJ|1|1x|G|19, 6CFJ|1|1x|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25462.3

Basepair signature

cWW-cWS

Number of instances in this motif group

23

Unit IDs

6CFJ|1|1x|C|13
6CFJ|1|1x|A|14
6CFJ|1|1x|G|15
6CFJ|1|1x|C|16
6CFJ|1|1x|C|17
6CFJ|1|1x|U|17|||A
6CFJ|1|1x|G|18
6CFJ|1|1x|G|19
6CFJ|1|1x|U|20
6CFJ|1|1x|A|21
6CFJ|1|1x|G|22

Current chains

Chain 1x

P-site tRNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 1G

50S ribosomal protein L5