HL_6CFJ_188

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CFJ_188 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.096

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6CFJ|1|2a|C|320
6CFJ|1|2a|A|321
6CFJ|1|2a|C|322
6CFJ|1|2a|U|323
6CFJ|1|2a|G|324
6CFJ|1|2a|A|325
6CFJ|1|2a|G|326
6CFJ|1|2a|A|327
6CFJ|1|2a|C|328
6CFJ|1|2a|A|329
6CFJ|1|2a|C|330
6CFJ|1|2a|G|331
6CFJ|1|2a|G|332
6CFJ|1|2a|G|333

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2t

30S ribosomal protein S20