HL_6CFK_172

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCAGC

Length

5 nucleotides

Bulged bases

6CFK|1|2A|A|2801|||A

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CFK_172 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.2672

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6CFK|1|2A|G|2793
6CFK|1|2A|C|2794
6CFK|1|2A|A|2801|||A
6CFK|1|2A|G|2802
6CFK|1|2A|C|2803

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains