HL_6CFK_197

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GAA(M2G)(5MC)AACGC

Length

10 nucleotides

Bulged bases

6CFK|1|2a|A|968, 6CFK|1|2a|G|971

QA status

Modified nucleotides: M2G, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CFK_197 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.1372

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6CFK|1|2a|G|963
6CFK|1|2a|A|964
6CFK|1|2a|A|965
6CFK|1|2a|M2G|966
6CFK|1|2a|5MC|967
6CFK|1|2a|A|968
6CFK|1|2a|A|969
6CFK|1|2a|C|970
6CFK|1|2a|G|971
6CFK|1|2a|C|972

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2i

30S ribosomal protein S9

Chain 2j

30S ribosomal protein S10

Chain 2y

Ribosome-associated inhibitor A