HL_6CFL_111

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

6CFL|1|2A|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CFL_111 not in the Motif Atlas

Homologous match to HL_7RQB_010

Geometric discrepancy: 0.0751

The information below is about HL_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

6CFL|1|2A|U|305
6CFL|1|2A|U|306
6CFL|1|2A|G|307
6CFL|1|2A|G|308
6CFL|1|2A|G|309
6CFL|1|2A|A|310
6CFL|1|2A|A|311
6CFL|1|2A|G|312

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Y

50S Ribosomal Protein L24