HL_6CFL_179

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

6CFL|1|2a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CFL_179 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0796

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6CFL|1|2a|G|259
6CFL|1|2a|G|260
6CFL|1|2a|U|261
6CFL|1|2a|A|262
6CFL|1|2a|A|263
6CFL|1|2a|U|264
6CFL|1|2a|G|265
6CFL|1|2a|G|266
6CFL|1|2a|C|267

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2q

30S ribosomal protein S17

Chain 2t

30S ribosomal protein S20