HL_6CFL_194

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAA(M2G)(5MC)AACGC

Length

10 nucleotides

Bulged bases

6CFL|1|2a|A|968, 6CFL|1|2a|G|971

QA status

Modified nucleotides: M2G, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CFL_194 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.1281

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6CFL|1|2a|G|963
6CFL|1|2a|A|964
6CFL|1|2a|A|965
6CFL|1|2a|M2G|966
6CFL|1|2a|5MC|967
6CFL|1|2a|A|968
6CFL|1|2a|A|969
6CFL|1|2a|C|970
6CFL|1|2a|G|971
6CFL|1|2a|C|972

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2i

30S ribosomal protein S9

Chain 2j

30S ribosomal protein S10

Chain 2y

Protein Y