HL_6CFL_201

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CFL_201 not in the Motif Atlas

Homologous match to HL_5J7L_027

Geometric discrepancy: 0.1553

The information below is about HL_5J7L_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6CFL|1|2a|G|1265
6CFL|1|2a|G|1266
6CFL|1|2a|C|1267
6CFL|1|2a|A|1268
6CFL|1|2a|A|1269
6CFL|1|2a|C|1270

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2m

30S ribosomal protein S13

Chain 2s

30S ribosomal protein S19

Chain 2u

30S Ribosomal Protein THX