HL_6CHR_005

3D structure

PDB id

6CHR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a group II intron lariat with an intact 3' splice site (pre-2s state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CHR_005 not in the Motif Atlas

Geometric match to HL_5DCV_002

Geometric discrepancy: 0.1111

The information below is about HL_5DCV_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

6CHR|1|A|C|173
6CHR|1|A|G|174
6CHR|1|A|A|175
6CHR|1|A|A|176
6CHR|1|A|A|177
6CHR|1|A|G|178

Current chains

Chain A

RNA (621-MER)

Nearby chains