HL_6CZR_027

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

6CZR|1|1A|U|1002, 6CZR|1|1A|C|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CZR_027 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1014

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6CZR|1|1A|C|999
6CZR|1|1A|G|1000
6CZR|1|1A|A|1001
6CZR|1|1A|U|1002
6CZR|1|1A|A|1003
6CZR|1|1A|A|1004
6CZR|1|1A|C|1005
6CZR|1|1A|G|1006

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1Q

50S ribosomal protein L16