3D structure

PDB id
6CZR (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of amicetin bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.14 Å

Loop

Sequence
CUGCAACCCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
T-loop with 3 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_02887.1
Basepair signature
cWW-tWH-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6CZR|1|1a|C|1296
6CZR|1|1a|U|1297
6CZR|1|1a|G|1298
6CZR|1|1a|C|1299
6CZR|1|1a|A|1300
6CZR|1|1a|A|1301
6CZR|1|1a|C|1302
6CZR|1|1a|C|1303
6CZR|1|1a|C|1304
6CZR|1|1a|G|1305

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1m
30S ribosomal protein S13
Chain 1n
30S ribosomal protein S14 type Z
Chain 1s
30S ribosomal protein S19

Coloring options:

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