Motif HL_02887.2 Version HL_02887.2 of this group appears in releases 3.91 to 3.92
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_028 | 5J7L | 0.0808 | 0 | T-loop with 3 stacked bulged bases | AA | SSU rRNA | C | 1314 | U | 1315 | G | 1316 | C | 1317 | A | 1318 | A | 1319 | C | 1320 | U | 1321 | C | 1322 | G | 1323 | cWW | tWH |
| 2 | HL_4LFB_029 | 4LFB | 0.0000 | 0 | T-loop with 3 stacked bulged bases | A | SSU rRNA | C | 1314 | U | 1315 | G | 1316 | C | 1317 | A | 1318 | A | 1319 | C | 1320 | C | 1321 | C | 1322 | G | 1323 | cWW | tWH |
| 3 | HL_6CZR_100 | 6CZR | 0.1799 | 0 | T-loop with 3 stacked bulged bases | 1a | SSU rRNA | C | 1296 | U | 1297 | G | 1298 | C | 1299 | A | 1300 | A | 1301 | C | 1302 | C | 1303 | C | 1304 | G | 1305 | cWW | ntWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGCAACCCG | 2 |
| CUGCAACUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGCAACCC | 2 |
| UGCAACUC | 1 |
- Annotations
-
- T-loop with 3 stacked bulged bases (3)
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Heat map statistics
- Min 0.08 | Avg 0.10 | Max 0.19
Coloring options: