HL_6CZR_140

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

6CZR|1|2A|C|1538, 6CZR|1|2A|U|1542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CZR_140 not in the Motif Atlas

Homologous match to HL_7RQB_038

Geometric discrepancy: 0.1885

The information below is about HL_7RQB_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

6CZR|1|2A|G|1537
6CZR|1|2A|C|1538
6CZR|1|2A|A|1539
6CZR|1|2A|A|1540
6CZR|1|2A|A|1541
6CZR|1|2A|U|1542
6CZR|1|2A|C|1543

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2