HL_6CZR_146

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GUGAUGAGC

Length

9 nucleotides

Bulged bases

6CZR|1|2A|U|1767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CZR_146 not in the Motif Atlas

Geometric match to HL_5UD5_002

Geometric discrepancy: 0.2964

The information below is about HL_5UD5_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

6CZR|1|2A|G|1763
6CZR|1|2A|U|1764
6CZR|1|2A|G|1765
6CZR|1|2A|A|1766
6CZR|1|2A|U|1767
6CZR|1|2A|G|1768
6CZR|1|2A|A|1769
6CZR|1|2A|G|1770
6CZR|1|2A|C|1771

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains