HL_6CZR_180

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

6CZR|1|2a|G|262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CZR_180 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1178

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_36455.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6CZR|1|2a|G|255
6CZR|1|2a|G|256
6CZR|1|2a|U|257
6CZR|1|2a|A|258
6CZR|1|2a|A|259
6CZR|1|2a|U|260
6CZR|1|2a|G|261
6CZR|1|2a|G|262
6CZR|1|2a|C|263

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2q

30S ribosomal protein S17

Chain 2t

30S ribosomal protein S20