HL_6CZR_211

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

6CZR|1|1A|A|2320, 6CZR|1|1A|A|2321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CZR_211 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.294

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6CZR|1|1A|G|2315
6CZR|1|1A|A|2316
6CZR|1|1A|C|2317
6CZR|1|1A|G|2318
6CZR|1|1A|G|2319
6CZR|1|1A|A|2320
6CZR|1|1A|A|2321
6CZR|1|1A|A|2322
6CZR|1|1A|U|2323

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1G

50S ribosomal protein L5